PTM Viewer

AT2G19710.1

Arabidopsis thaliana [ath]

Regulator of Vps4 activity in the MVB pathway protein

36 PTM sites : 2 PTM types

Gene Family: HOM05D000325

Other Names: NULL

Uniprot

Link out to other resources with this protein ID : TAIR | PeptideAtlas | ARAPORT | PhosPhAt

For each protein all PTMs are highlighted by default in the respective protein sequence (right-hand side). One can adjust a selection of PTMs in the PTM table on the left-hand side. In addition, functional protein domains and sites can be underlined if desired.

In the PTM table per PTM the PTM position and type is indicated, as well as the plain peptide sequence that was identified by mass spectrometry. The respective proteomics study is indicated by a number, providing a link to consult the experimental details. Additional PTM meta-data includes various confidence measures such as peptide score provided by search algorithms, posterior error probability (PEP), precursor mass deviation (in ppm) and modification site probability. The available confidence meta-data can be consulted in the extended PTM table by clicking SHOW CONFIDENCE. However, in the default PTM table, a color-coding of confidence is provided with green indicating high confidence, olive medium confidence, grey low confidence, and no color an unassigned confidence. More details regarding this confidence assignment can be consulted in the tutorial or the Plant PTM Viewer manuscript.

Besides confidence measures, log2 fold changes between two conditions with significance values (P- or Q-values) are shown if provided in the respective publication. Log2 fold changes are colored in heatmap-like gradient (green = induced, red = repressed) and significant values are highlighted in green. To determine significance, we employed the threshold used in the respective publication. For more details on the quantitative measurements we refer to the experimental details and respective publication, as methodologies can differ.

On the bottom of the page one can send the whole protein or a part of the protein (i.e. a functional domain) to PTM Blast. This will display aligned protein sequences that potentially report aligned PTMs.

PTMs

Export
Results

PTM Type	Mod AA	Pos	Peptide	Exp ID	Log2 FC	P/Q val	Score Type	Ident Score	Loc Prob	PEP	Mass Error (ppm)
nta	M	1	MKKVLQR	167a
ph	T	52	ELAQLLESGQTPTAR	114			MaxQuant score	202.340	0.913	1.682e-44
ph	S	242	HHSPENSYANGGR	85			XCorr	2.760	0.999	6.800e-4
				88			MASCOT Score	31.000	1.000		1.870
				100			XCorr	4.245	1.000	4.844e-5
				114			MaxQuant score	103.320	1.000	4.931e-5
ph	S	345	QDSTQSHISSASVNLR	61a			MASCOT Score	31.000	1.000
				83			MASCOT Score	43.000			-0.001
				88			MASCOT Score	55.000	0.995		-0.020
				100			XCorr	3.367	0.998	7.942e-6
				109					0.818
				114			MaxQuant score	129.050	0.943	2.669e-8
ph	T	346	QDSTQSHISSASVNLR	44			XCorr	3.361
ph	S	348	QDSTQSHISSASVNLR	83			MASCOT Score	26.000			-0.000
ph	S	351	QDSTQSHISSASVNLR	83			MASCOT Score	22.000			0.001
ph	S	354	QDSTQSHISSASVNLR	114			MaxQuant score	83.395	0.767	6.932e-5
ph	S	374	SNAQRESFSEDHVSPR	109					0.801
ph	S	374	SNAQRESFSEDHVSPR	114			MaxQuant score	101.410	0.994	3.127e-6
ph	S	376	ESFSEDHVSPR	114			MaxQuant score	86.756	0.971	4.964e-4
ph	S	381	ESFSEDHVSPR	88			MASCOT Score	64.000	1.000		-0.020
				111a	-0.329	0.000		27.820			-0.788
				111b	-0.329	0.000		27.820			-0.788
				111c	-0.308	0.000		27.820			-0.788
				111d	-0.308	0.000		27.820			-0.788
				114			MaxQuant score	268.930	1.000	0.000e+0
ph	S	414	AEQIPPVDQPSGRHSVDNSR	109					0.757
ph	S	418	AEQIPPVDQPSGRHSVDNSR	114			MaxQuant score	79.426	0.751	1.240e-5
ph	S	468	VSSHSHSSNYSDENDLGSDFMK	114			MaxQuant score	173.330	0.999	2.803e-45
ph	S	482	SPSIVEENIFATEYDHQSQSSFK	114			MaxQuant score	150.480	0.999	2.063e-34
ph	S	565	TSASAASWSFKGDHSK	114			MaxQuant score	169.430	1.000	7.349e-36
ph	S	565	TSASAASWSFK	100			XCorr	4.157	1.000	2.722e-6
ph	S	582	HSSSSSQVFQENPSSR	114			MaxQuant score	134.980	0.971	5.419e-8
ph	S	600	LFDDVSTSPPASYHEPDPHAK	83			MASCOT Score	25.000			-0.001
				88			MASCOT Score	38.000	0.943		-0.670
				100			XCorr	3.750	0.853	3.608e-4
				114			MaxQuant score	181.380	0.994	8.408e-45
ph	Y	617	FDNYGPNSESDGDQPIDK	83			MASCOT Score	41.000			-0.002
ph	S	621	FDNYGPNSESDGDQPIDK	61a			MASCOT Score	47.000	1.000
				83			MASCOT Score	42.000			-0.002
				84a			XCorr	5.320	0.995	1.775e-3
				84b			XCorr	5.140	1.000	1.490e-5
				85			XCorr	4.846	1.000	6.243e-16
				100			XCorr	5.161	1.000	7.758e-6
				114			MaxQuant score	188.560	0.999	2.272e-36
ph	S	623	FDNYGPNSESDGDQPIDK	61a			MASCOT Score	34.000	1.000
				83			MASCOT Score	42.000			-0.002
				84b			XCorr	5.140	1.000	1.490e-5
				85			XCorr	4.296	1.000	4.018e-4
				100			XCorr	5.161	1.000	7.758e-6
				114			MaxQuant score	100.450	0.999	1.829e-6
ph	S	633	VSGDVHER	23
ph	S	653	FKVSDSAGHEVFPLDTEEHTDNSR	114			MaxQuant score	159.420	0.780	0.000e+0
ph	S	655	VSDSAGHEVFPLDTEEHTDNSR	114			MaxQuant score	228.250	0.991	0.000e+0
ph	S	678	TREESDSDSEPQLGLR	61a			MASCOT Score	32.000	1.000
				83			MASCOT Score	24.000			-0.003
				85			XCorr	3.996	0.999	3.963e-16
				88			MASCOT Score	48.000	0.997		0.230
				100			XCorr	4.781	0.990	4.827e-6
				109					0.999
				114			MaxQuant score	200.450	1.000	1.232e-36
ph	S	680	TREESDSDSEPQLGLR	61a			MASCOT Score	32.000	1.000
				83			MASCOT Score	24.000			-0.003
				85			XCorr	3.996	0.994	3.963e-16
				88			MASCOT Score	46.000	0.932		-0.040
				100			XCorr	4.781	0.990	4.827e-6
				109					1.000
				114			MaxQuant score	200.450	1.000	1.232e-36
ph	S	772	SDSLYSHSR	114			MaxQuant score	148.440	0.985	2.149e-7
ph	S	774	SDSLYSHSR	114			MaxQuant score	76.332	0.993	6.022e-3
ph	S	786	VNHDDSEEEKLPTR	18a			MaxQuant Score	56.121	1.000	5.444e-5	0.523
				60			MASCOT Score	41.140			-0.067
				61a			MASCOT Score	33.000	1.000
				83			MASCOT Score	24.000			-0.003
				84b			XCorr	2.800	0.997	1.444e-2
				85			XCorr	3.175	1.000	2.381e-4
				88			MASCOT Score	63.000	1.000		0.730
				109					1.000
				111a	-0.081	0.000		27.330			-0.194
				111b	-0.081	0.000		27.330			-0.194
				111c	-0.387	0.000		27.330			-0.194
				111d	-0.387	0.000		27.330			-0.194
				114			MaxQuant score	220.100	1.000	0.000e+0
ph	S	825	MPVSASSEDEEEVEREAAR	100			XCorr	2.391	0.977	1.989e-2
			MPVSASSEDEEEVER	85			XCorr	3.493	0.934	3.115e-5
				88			MASCOT Score	72.000	1.000		-0.480
				109					1.000
				114			MaxQuant score	135.020	0.996	3.915e-7
ph	S	826	MPVSASSEDEEEVEREAAR	100			XCorr	2.391	0.977	1.989e-2
			MPVSASSEDEEEVER	59			MASCOT Score	53.000			-1.523
				88			MASCOT Score	74.000	0.997		-0.360
				114			MaxQuant score	228.760	0.999	0.000e+0
ph	S	852	TTGYGFSLR	114			MaxQuant score	132.170	1.000	1.126e-4
ph	T	870	HSLPVTTKK	114			MaxQuant score	62.166	0.760	5.135e-3
ph	S	883	KTDKESHDQPSPR	114			MaxQuant score	106.310	1.000	5.444e-5
			TDKESHDQPSPR	88			MASCOT Score	29.000	1.000		-0.700
			ESHDQPSPR	88			MASCOT Score	43.000	1.000		-0.770
ph	S	898	TVTSSHVPQTVKSPDPDTPSR	88			MASCOT Score	44.000	1.000		-1.140
				100			XCorr	4.130	0.999	4.958e-3
				109					0.813
				111a	0.278	0.000		31.430			0.487
				111b	0.278	0.000		31.430			0.487
				111c	0.249	0.000		31.430			0.487
				111d	0.249	0.000		31.430			0.487
				114			MaxQuant score	199.460	1.000	0.000e+0
ph	T	903	TVTSSHVPQTVKSPDPDTPSR	114			MaxQuant score	199.460	0.997	0.000e+0

Sequence

Length: 937

MKKVLQRGFKPAKCKTALQMANSRLKILKNKKEIQIKQLRRELAQLLESGQTPTARIRVEHVVREEKTVAAYELIGIYCELLVVRLGVIESQKNCPIDLKEAVTSVLFASQRLSDVPELSEIFKQFTTKYGKDFSTSAVELRPDSGVSRLLVEKLSAKAPDGPTKVKILMAIAEEHNVVWEAQSFVESDPKDTELLNGANSFQPASSMNMDSSINSNKEQPPNIHAPATVNAHHGSSERHHSPENSYANGGRSSSRSNNVTSGKADDYYHSKARPSRSRPDEGECRNPNHGYENSSSRNKQKWEPEFVDSTDAARAAAEAAERASFAARAAAELSNKERMTRQDSTQSHISSASVNLRNEPSHRRDRSNAQRESFSEDHVSPRRNVRMQYEDMDRTRQDRYDRAEQIPPVDQPSGRHSVDNSRNNGSFGREKQPSQDETDINVGYSEDVHLRKQSSRVSSHSHSSNYSDENDLGSDFMKSPSIVEENIFATEYDHQSQSSFKDIDSHDHGHDDDAAATDNYDDYSSFFYQPKFHAEDNHYQDEIDHGVGFSLLGSKTSASAASWSFKGDHSKSHGKHSSSSSQVFQENPSSRLFDDVSTSPPASYHEPDPHAKFDNYGPNSESDGDQPIDKVSGDVHERGNLTSDRSHKFKVSDSAGHEVFPLDTEEHTDNSRTREESDSDSEPQLGLRLGALAGGFRNKKTLPPYRMSSASSKAEKEYIQIDDFGQSSRKDLYSKKASNTETRPSFMPPHPSSSDEDDSDMQHPGRTETKSDSLYSHSRVNHDDSEEEKLPTRSSSRIQERSHKPSTGIRVQKRTNFKMPVSASSEDEEEVEREAARINAKPNKTTGYGFSLRTKGQSKANEKHSLPVTTKKTDKESHDQPSPRTVTSSHVPQTVKSPDPDTPSRERERASHVHPNLPEYDDIFARLGALRAPSRR

ID	PTM Type	Color
nta	N-terminal Acetylation	X
ph	Phosphorylation	X
	Multiple types	X

No domains or active sites found for this protein.

AT2G19710.1

Arabidopsis thaliana [ath]

Regulator of Vps4 activity in the MVB pathway protein

36 PTM sites : 2 PTM types

PLAZA: AT2G19710

Gene Family: HOM05D000325

Other Names: NULL

Uniprot

F4ITF9

Link out to other resources with this protein ID : TAIR | PeptideAtlas | ARAPORT | PhosPhAt

PTMs

Sequence

Length: 937

BLAST

Perform a BLAST search for this sequence, or a part of this sequence (minimum 50 characters)
A downloadable tutorial can be found here

AT2G19710.1

Arabidopsis thaliana [ath]

Regulator of Vps4 activity in the MVB pathway protein

36 PTM sites : 2 PTM types

PLAZA: AT2G19710

Gene Family: HOM05D000325

Other Names: NULL

Uniprot

F4ITF9

Link out to other resources with this protein ID : TAIR | PeptideAtlas | ARAPORT | PhosPhAt

PTMs

Sequence

Length: 937

BLAST

Perform a BLAST search for this sequence, or a part of this sequence (minimum 50 characters)A downloadable tutorial can be found here

Perform a BLAST search for this sequence, or a part of this sequence (minimum 50 characters)
A downloadable tutorial can be found here